Converting DGEList Data into MicrobiomeStat
Learn the steps to convert DGEList data format into MicrobiomeStat data format.
Last updated
Learn the steps to convert DGEList data format into MicrobiomeStat data format.
Last updated
This guide will assist you in converting DGEList data format into MicrobiomeStat format.
Before we proceed with the conversion, let's examine the original structure of our DGEList data:
Now, follow the steps below to convert the DGEList data:
After conversion, let's take a look at the transformed data structure:
By using the mStat_convert_DGEList_to_data_obj
function, you can effectively convert:
dge.obj: Your existing DGEList object.
The resultant MicrobiomeStat data object includes:
feature.tab: A matrix populated with counts data.
meta.dat: A data frame detailing the sample information.
As part of the conversion process, features with a sum of zero from the counts data are filtered out to maintain data relevance.