Importing Data from BIOM into MicrobiomeStat
Guide to importing BIOM data into MicrobiomeStat data object.
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Guide to importing BIOM data into MicrobiomeStat data object.
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Follow the instructions below to convert your BIOM data into a format suitable for MicrobiomeStat.
By employing the mStat_import_biom_as_data_obj
function, the BIOM data, along with optional phylogenetic tree data, can be integrated into the MicrobiomeStat framework. Here's a brief overview of the function's parameters:
BIOMfilename: The file path to your BIOM data.
treefilename (Optional): The file path to your phylogenetic tree.
parseFunction (Optional): A user-defined function to interpret the taxonomy from the BIOM file metadata.